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Removing entities in doctrine2 is concpetually and easy process. I'm referring to removing the actual model class and the physical php file. I just had to remove a few of them from my application. I thought, easy, I'll delete the file, drop the table, remove any references in my other entities and clear the cache and I should be good to go So needless to say, I was surprised to get an error saying that the ClassMetadataFacrtory.php file could not find one of my entities on line 223.